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Publications


Journal Covers


Advanced Biology (2021)

SMALL (2020)

Advanced Science (2020)

Advanced BioSystems (2020)

Advanced Materials (2020)

Advanced Materials (2020)

Colloids and Surfaces B: Biointerfaces (2019)

Advanced Science (2018)

Advanced Science (2018)

Chemical Society Reviews (2017)

Advanced Healthcare Materials (2015)

Advanced Materials (2015)

Advanced Materials (2014)

Small (2013)

Trends in Biotechnology (2013)

Advanced Materials (2013)

Lab on a Chip (2013)

 


Publications


2021


  1. Inci, Fatih, Merve Goksin Karaaslan, Rakhi Gupta, Anirudh Avadhani, Mehmet Giray Ogut, Ekin Erin Atila, George Duncan, Leonard Klevan, and Utkan Demirci. "BIO-INSPIRED MAGNETIC BEADS FOR ISOLATION OF SPERM FROM HETEROGENOUS SAMPLES IN FORENSIC APPLICATIONS." Forensic Science International: Genetics (2021): 102451.
  2. Guimarães, Carlos F., Rajib Ahmed, Alexandra P. Marques, Rui L. Reis, and Utkan Demirci. "Engineering Hydrogel-Based Biomedical Photonics: Design, Fabrication, and Applications." Advanced Materials (2021): e2006582-e2006582.
  3. Soto, Fernando, Carlos F. Guimarães, Rui L. Reis, Walfre Franco, Imran Rizvi, and Utkan Demirci. "Emerging biofabrication approaches for gastrointestinal organoids towards patient specific cancer models." Cancer Letters 504 (2021): 116-124.
  4. Kabir, Md Alamgir, Rajib Ahmed, Rasheduzzaman Chowdhury, Sheikh Muhammad Asher Iqbal, Ramasamy Paulmurugan, Utkan Demirci, and Waseem Asghar. "Management of COVID-19: Current Status and Future Prospects." Microbes and infection (2021): 104832.
  5. Jie Wang, Peng Ma, Daniel H Kim, Bi Feng Liu, Utkan Demirci. "Towards microfluidic-based exosome isolation and detection for tumor therapy." NanoToday (2020): 1748.
  6. Kabir, MD Alamgir, Rajib Ahmed, Sheikh Muhammad Asher Iqbal, Rasheduzzaman Chowdhury, Ramasamy Paulmurugan, Utkan Demirci, and Waseem Asghar. "Diagnosis for COVID-19: current status and future prospects." Expert Review of Molecular Diagnostics (2021): 1-20.
  7. Taylor, Shalina, Kévin Contrepois, Bérénice A. Benayoun, Lihua Jiang, Sarasa Isobe, Lingli Wang, Stavros Melemenidis et al. "Endogenous Retroviral Elements Generate Pathologic Neutrophils and Elastase Rich Exosomes in Pulmonary Arterial Hypertension." bioRxiv (2021).
  8. Antmen, Ezgi, Utkan Demirci, and Vasif Hasirci. "Micropatterned Surfaces Expose the Coupling between Actin Cytoskeleton‐Lamin/Nesprin and Nuclear Deformability of Breast Cancer Cells with Different Malignancies." Advanced Biology 5, no. 1 (2021): 2000048.
  9. 2020


  10. Wang, Jie, Rajib Ahmed, Yitian Zeng, Kaiyu Fu, Fernando Soto, Bob Sinclair, Hyongsok Tom Soh, and Utkan Demirci. "Engineering the Interaction Dynamics between Nano‐Topographical Immunocyte‐Templated Micromotors across Scales from Ions to Cells." Small (2020): 2005185.
  11. Razavi, Mehdi, Tanchen Ren, Fengyang Zheng, Arsenii Telichko, Jing Wang, Jeremy J. Dahl, Utkan Demirci, and Avnesh S. Thakor. "Facilitating islet transplantation using a three-step approach with mesenchymal stem cells, encapsulation, and pulsed focused ultrasound." Stem cell research & therapy 11, no. 1 (2020): 1-17.
  12. Connor G OBrien, Mehmet O Ozen, Evgeniya Vaskova, Jihye Jung, Michelle Santoso, Liye Shi, Christine A Wahlquist, Zewen Jiang, Yunshin Jung, Gentaro Ikeda, Yitian Zeng, Robert Sinclair, Adrian Gee, Ronald M Witteles, Mark Mercola, Katrin Svensson, Utkan Demirci, Phillip C Yang. "Mesenchymal Stem Cells Rescue Patient-Specific Cardiomyocyte Viability and Function Following Doxorubicin Injury via Microvesicle Mediated Mitochondrial Transfer to Recapitulate Human Clinical Trial Results." Circulation 142, no. Suppl_3 (2020): A14859-A14859.
  13. Chandy, Mark, June-Wha Rhee, Mehmet O. Ozen, Damon R. Williams, Lejla Pepic, Chun Liu, Hao Zhang et al. "Atlas of Exosomal microRNAs Secreted From Human iPSC-Derived Cardiac Cell Types." Circulation 142, no. 18 (2020): 1794-1796.
  14. Razavi, Mehdi, Melika Rezaee, Arsenii Telichko, Hakan Inan, Jeremy Dahl, Utkan Demirci, and Avnesh S. Thakor. "The Paracrine Function of Mesenchymal Stem Cells in Response to Pulsed Focused Ultrasound." Cell Transplantation 29 (2020): 0963689720965478.
  15. Inci, F., Karaaslan, M.G., Kojouri, A.M., Shah, P.A., Saylan, Y., Zeng, Y., Avadhani, A., Sinclair, R., Lau, D.T-Y#, Demirci, U. #, “Enhancing the Nanoplasmonic Signal by a Nanoparticle Sandwiching Strategy to Detect Viruses.” Applied Materials Today 20 (2020): 10070.
  16. Amideddin Mataji-Kojouri,Mehmet Ozgun Ozen, Mahmoud Shahabadi#, Inci, F.#, Demirci, U.#, Entangled Nano-Plasmonic Cavities for Estimating Thickness of Surface Adsorbed Layers, ACS Nano, 2020
  17. Vladislav A. Parfenov*, Yusef D. Khesuani*, Stanislav V. Petrov, Pavel A. Karalkin, Elizaveta V. Koudan, Elizaveta K. Nezhurina, Frederico DAS Pereira, Alisa A. Krokhmal, Anna A. Gryadunova, Elena A. Bulanova, Vladimir Kasyanov, Oleg F. Petrov, Mikhail M. Vasiliev, Vladimir E. Fortov, Kenn Brakke, Sergei I. Belousov, Timofei E. Grigoriev, Egor Osidak, Yekaterina I. Rossiyskaya, Lyudmila B. Buravkova, Oleg D. Kononenko, Demirci, U.#, Vladimir A. Mironov#, Magnetic levitational bioassembly in Space. Science Advances, 6 (2020) : eaba4174.
  18. Wu, G., Wu, D., Lo, J., Wang, Y., Wu, J., Lu, S., Xu, H., Zhao, X., He, Y., Li, J., Demirci, U., Wang, S., “Bioartificial Liver Support System Integrated with a DLM/GelMA-Based Bioengineered Whole Liver for Prevention of Hepatic Encephalopathy via Enhanced Ammonia Reduction.” Biofabrication, 2020, BM-ART-11-2019-001879.R1.
  19. Nath, S., Pigula, M., Khan, A., Hanna, W., Ruhi, M.K., Dehkordy, F.M., Pushpavanam, K., Rege, K., Moore, K., Tsujita, Y., Inci, F., del Carmen, M.G., Franco, W., Celli, J.P., Demirci, U., Hasan, T., Huang, H-C., Rizvi, I., “Flow-induced Shear Stress Confers Resistance to Carboplatin in an Adherent Three-Dimensional Model for Ovarian Cancer: A Role for EGFR-Targeted Photoimmunotherapy Informed by Physical Stress.” Journal of Clinical Microbiology, 2020, jcm-724325
  20. Antmen, E., Demirci, U., Hasirci, V., “Loss of Nuclear Deformability of Breast Cancer Cells by the Disruption of Actin Filaments.” ACS Applied Materials & Interfaces, bioRxiv, 10.1101/854562
  21. Deshmukh, Shreya, Fatih Inci, Merve Goksin Karaaslan, Mehmet Giray Ogut, Derek Duncan, Leonard Klevan, George Duncan, and Utkan Demirci. "A Confirmatory Test for Sperm in Sexual Assault Samples using a Microfluidic-Integrated Cell Phone Imaging System." Forensic Science International: Genetics (2020): 102313.
  22. Nazan Puluca, Naside Gözde Durmus, Soah Lee, Nadjet Belbachir, Francisco X. Galdos, Mehmet Giray Ogut, Rakhi Gupta, Ken-ichi Hirano, Markus Krane, Rüdiger Lange, Joseph C. Wu, Sean M. Wu, and Utkan Demirci (2020). Levitating Cells to Sort the Fit and the Fat. Advanced Biosystems, 1900300.
  23. Shubhankar Nath , Michael Pigula , Amjad P. Khan , William Hanna , Mustafa Kemal Ruhi, Farzaneh Mahmoodpoor Dehkordy, Karthik Pushpavanam, Kaushal Rege, Kaitlin Moore , Yujiro Tsujita, Christina Conrad, Fatih Inci, Marcela G. del Carmen, Walfre Franco, Jonathan P. Celli, Utkan Demirci, Tayyaba Hasan, Huang-Chiao Huang, and Imran Rizvi (2020). Flow-induced Shear Stress Confers Resistance to Carboplatin in an Adherent Three-Dimensional Model for Ovarian Cancer: A Role for EGFR-Targeted Photoimmunotherapy Informed by Physical Stress. Journal of Clinical Medicine, 9(4), 924.
  24. Ren, T., Steiger, W., Chen, P., Ovsianikov, A., & Demirci, U. (2020). Enhancing cell packing in buckyballs by acoustofluidic activation. Biofabrication, 12(2), 025033.
  25. Parfenov, V.A., Mironov, V.A., Koudan, E.V., Nezhurina, E.K., Karalkin, P.A., Pereira, F.D., Petrov, S.V., Krokhmal, A.A., Timur, A., Demirci, U., Vakhrushev, I.V. and Zobkov, Y.V., 2020. Fabrication of calcium phosphate 3D scaffolds for bone repair using magnetic levitational assembly. Scientific Reports (Nature Publisher Group), 10(1).
  26. Inci, Fatih, Yeşeren Saylan, Amideddin Mataji Kojouri, Mehmet Giray Ogut, Adil Denizli, and Utkan Demirci. "A disposable microfluidic-integrated hand-held plasmonic platform for protein detection." Applied Materials Today (2019): 100478.
  27. Aygun, Ugur, Ayca Yalcin Ozkumur, Naside Gozde Durmus, Utkan Demirci, and Hakan Ürey. "Label-free imaging of exosomes using depth scanning correlation (DSC) interferometric microscopy." In Label-free Biomedical Imaging and Sensing (LBIS) 2020, vol. 11251, p. 112510Q. International Society for Optics and Photonics, 2020.
  28. Ozen, Mehmet O., Kaushik Sridhar, Mehmet Giray Ogut, Akash Shanmugam, Anirudh S. Avadhani, Yukari Kobayashi, Joseph C. Wu, Francois Haddad, and Utkan Demirci. "Total Microfluidic chip for Multiplexed diagnostics (ToMMx)." Biosensors and Bioelectronics 150 (2020): 111930.
  29. Calamak, Semih, Menekse Ermis, Han Sun, Saiful Islam, Michael Sikora, Michelle Nguyen, Vasif Hasirci, Lars M. Steinmetz, and Utkan Demirci. "A Circulating Bioreactor Reprograms Cancer Cells Toward a More Mesenchymal Niche." Advanced Biosystems (2020): 1900139.
  30. Ren, Tanchen, Pu Chen, Longjun Gu, Mehmet Giray Ogut, and Utkan Demirci. "Soft Ring‐Shaped Cellu‐Robots with Simultaneous Locomotion in Batches." Advanced Materials (2019): 1905713.
  31. Wu, G., Wu, D., Lo, J., Wang, Y., Wu, J., Lu, S., Xu, H., Zhao, X., He, Y., Li, J. and Demirci, U., 2020. Bioartificial Liver Support System Integrated with a DLM/GelMA-Based Bioengineered Whole Liver for Prevention of Hepatic Encephalopathy via Enhanced Ammonia Reduction. Biomaterials Science.
  32. R. Ahmed, M. O. Ozen, M. G. Karaaslan, C. A. Prator, C. Thanh, S. Kumar, L. Torres, N. Iyer, S. Munter, S. Southern, T. J. Henrich, F. Inci, and U. Demirci " Tunable Fano-Resonant Metasurfaces on a Disposable Plastic-Template for Multimodal and Multiplex Biosensing." Advanced Materials (2020).
  33. Zhao, Yanan, Utkan Demirci, Yun Chen, and Pu Chen. "Multiscale brain research on a microfluidic chip." Lab on a Chip (2020).
  34. 2019


  35. Fan, Han, Utkan Demirci, and Pu Chen. "Emerging organoid models: leaping forward in cancer research." Journal of Hematology & Oncology 12, no. 1 (2019): 1-10.
  36. Antmen, Ezgi, Utkan Demirci, and Vasif Hasirci. "Amplification of nuclear deformation of breast cancer cells by seeding on micropatterned surfaces to better distinguish their malignancies." Colloids and Surfaces B: Biointerfaces 183 (2019): 110402.
  37. Kobayashi Y, Kim JB, Moneghetti KJ, Fischbein M, Lee A, Watkins CA, Yeung AC, Liang D, Ozen MO, Demirci U, Bowen R. Utility of High-Sensitivity and Conventional Troponin in Patients Undergoing Transcatheter Aortic Valve Replacement: Incremental Prognostic Value to B-type Natriuretic Peptide. Scientific Reports. 2019 Oct 17;9(1):1-7.
  38. Dong Y, Wang J, Guo X, Yang S, Ozen MO, Chen P, Liu X, Du W, Xiao F, Demirci U, Liu BF. Multi-stimuli-responsive programmable biomimetic actuator. Nature Communications. 2019 Sep 9;10(1):1-0.
  39. Li, Zihan, Luca Leustean, Fatih Inci, Min Zheng, Utkan Demirci, and Shuqi Wang. "Plasmonic-based platforms for diagnosis of infectious diseases at the point-of-care." Biotechnology Advances (2019): 107440.
  40. Yukari Kobayashi, Maxime Tremblay-Gravel, Kalyani A. Boralkar, Xiao Li, Tomoko Nishi, Myriam Amsallem, Kegan J. Moneghetti, Sara Bouajila, Mona Selej, Mehmet O. Ozen, Utkan Demirci, Euan Ashley, Matthew Wheeler, Kirk U. Knowlton, Tatiana Kouznetsova, and Francois Haddad "Approaching Higher Dimension Imaging Data Using Cluster-Based Hierarchical Modeling in Patients with Heart Failure Preserved Ejection Fraction." Scientific Reports 9, no. 1 (2019): 10431.
  41. Hasturk, Onur, Menekse Ermis, Utkan Demirci, Nesrin Hasirci, and Vasif Hasirci. "Square prism micropillars on poly (methyl methacrylate) surfaces modulate the morphology and differentiation of human dental pulp mesenchymal stem cells." Colloids and Surfaces B: Biointerfaces 178 (2019): 44-55.
  42. Baday, Murat, Ozlem Ercal, Ayse Zisan Sahan, Asude Sahan, Baris Ercal, Hakan Inan, and Utkan Demirci. "Density Based Characterization of Mechanical Cues on Cancer Cells Using Magnetic Levitation." Advanced Healthcare Materials (2019): 1801517.
  43. Asghar, Waseem, Mazhar Sher, Nida S. Khan, Jatin M. Vyas, and Utkan Demirci. "Microfluidic Chip for Detection of Fungal Infections." ACS Omega 4, no. 4 (2019): 7474-7481.
  44. Yuan, K., Shamskhou, E.A., Orcholski, M.E., Nathan, A., Reddy, S., Honda, H., Mani, V., Zeng, Y., Ozen, M.O., Wang, L. and Demirci, U. "Loss of Endothelium-Derived Wnt5a Is Associated With Reduced Pericyte Recruitment and Small Vessel Loss in Pulmonary Arterial Hypertension." Circulation 139, no. 14 (2019): 1710-1724.
  45. El Assal, Rami, Lotfi Abou‐Elkacem, Alessandro Tocchio, Shannon Pasley, Sandro Matosevic, David L. Kaplan, Claudia Zylberberg, and Utkan Demirci. "Bioinspired Preservation of Natural Killer Cells for Cancer Immunotherapy." Advanced Science 6, no. 6 (2019): 1802045.
  46. Ren, Tanchen, Bianka Grosshäuser, Kaushik Sridhar, Thomas JF Nieland, Alessandro Tocchio, Ute Schepers, and Utkan Demirci. "3-D geometry and irregular connectivity dictate neuronal firing in frequency domain and synchronization." Biomaterials 197 (2019): 171-181.
  47. Antmen, Ezgi, Menekse Ermis, Utkan Demirci, and Vasif Hasirci. "Engineered natural and synthetic polymer surfaces induce nuclear deformation in osteosarcoma cells." Journal of Biomedical Materials Research Part B: Applied Biomaterials 107, no. 2 (2019): 366-376.
  48. Che, C., Li, N., Long, K.D., Aguirre, M.Á., Canady, T.D., Huang, Q., Demirci, U. and Cunningham, B.T., 2019. Activate capture and digital counting (AC+ DC) assay for protein biomarker detection integrated with a self-powered microfluidic cartridge. Lab on a Chip, 19(23), pp.3943-3953.
  49. Mani, Vigneshwaran, Zhonglin Lyu, Vineet Kumar, Baris Ercal, Hong Chen, Sanjay V. Malhotra, and Utkan Demirci. "Epithelial‐to‐Mesenchymal Transition (EMT) and Drug Response in Dynamic Bioengineered Lung Cancer Microenvironment." Advanced Biosystems (2019): 1800223.
  50.  

    2018


  51. O’Brien, Connor G., Liye Shi, Michelle R. Santoso, Ji-Hye Jung, Evgeniya Vaskova, Gentaro Ikeda, Mehmet O. Ozen, Utkan Demirci, and Phillip C. Yang. "Microvesicles Rescue Cardiomyocytes From Doxorubicin Injury in a Patient Specific Model of Anthracycline Induced Cardiomyopathy." Circulation 138.Suppl_1 (2018): A16965-A16965.
  52. Demirci, Utkan, and Margery Corbett. "Automation of Differential Extraction With Sperm Quantitation Using Microfluidic-lntegrated Shadow Imaging System for Forensic Applications." (2018).
  53. Canadas, R. F., Ren, T., Marques, A. P., Oliveira, J. M., Reis, R. L., & Demirci, U. (2018). Biochemical Gradients to Generate 3D Heterotypic‐Like Tissues with Isotropic and Anisotropic Architectures. Advanced Functional Materials, 28(48), 1804148.
  54. Canadas, R. F., Ren, T., Tocchio, A., Marques, A. P., Oliveira, J. M., Reis, R. L., & Demirci, U. (2018). "Tunable anisotropic networks for 3-D oriented neural tissue models." Biomaterials, 2018;181:402-414.
  55. Quinn, MM., Jalalian, L., Ribeiro, S., Ona, K., Demirci, U., Cedars, M., Rosen, M., “Microfluidic sorting selects sperm for clinical use with reduced DNA damage compared to density-gradient centrifugation in split semen samples.” Human Reproduction 2018, doi: 10.1093/humrep/dey239.
  56. Tocchio, A., Durmus, N. G., Sridhar, K., Mani, V., Coskun, B., Assal, R. E., & Demirci, U. (2017). Magnetically Guided Self-Assembly and Coding of 3D Living Architectures. Advanced Materials, 30(4), 1705034. doi:10.1002/adma.201705034.
  57. Inci, F., Ozen, MO., Saylan, Y., Miansari, M., Cimen, D., Dhara, R., Chinnasamy, T., Yuksekkaya, M., Filippini, C., Kumar, DK., Calamak, S., Yesil, Y., Durmus, NG., Duncan, G., Klevan, L.#, Demirci, U.#, “A novel on-chip method for differential extraction of sperm in forensic cases.” Advanced Science, 2018, 5, 180012.
  58. Afshar, S., Nath, S., Demirci, U., Hasan, T., Scarcelli, G., Rizvi, I., & Franco, W. (2018, February). Identification of hydrodynamic forces around 3D surrogates using particle image velocimetry in a microfluidic channel. In Microfluidics, BioMEMS, and Medical Microsystems XVI (Vol. 10491, p. 1049103). International Society for Optics and Photonics.
  59. Antmen, E., Ermis, M., Demirci, U., Hasirci, V.“Engineered Natural and Synthetic Polymer Surfaces Induce Nuclear Deformation in Osteosarcoma Cells.” Journal of Biomedical materials Research Part B: Applied Biomaterials, 2018; doi.org/10.1002/jbm.b.34128.
  60. Parfenov, V., Koudan, E., Bulanova, E., Karalkin, P., Pereira, F., Norkin, N., Knyazeva, A., Gryadunova, A., Petrov, O., Vasiliev, M, Myasnikov, M., Chernikov, V., Kasyanov, V., Marchenkov, A., Brakke, K., Khesuani, Y., Demirci, U., Mironov, V., “Scaffold-free, label-free and nozzle-free biofabrication technology using magnetic levitational assembly.” Biofabrication 2018, 18;10(3):034104.
  61. Song H, Konan LM, Cui J, Johnson CE, Langenderfer M, Grant D, Ndam T, Simonyi A, White T, Demirci U, Mott DR. Ultrastructural brain abnormalities and associated behavioral changes in mice after low-intensity blast exposure. Behavioural brain research. 2018 Jul 16;347:148-57. doi: 10.1016/j.bbr.2018.03.007
  62. Hasturk, O., Ermis, M., Demirci, U., Hasirci, N., & Hasirci, V. (2018). Square prism micropillars improve osteogenicity of poly (methyl methacrylate) surfaces. Journal of Materials Science: Materials in Medicine, 29(5), 53. doi:10.1007/s10856-018-6059-z
  63. Antmen, E., Ermis, M., Demirci, U., & Hasirci, V. (2018). Engineered natural and synthetic polymer surfaces induce nuclear deformation in osteosarcoma cells. Journal of Biomedical Materials Research Part B: Applied Biomaterials. doi:10.1002/jbm.b.34128
  64. Chinnasamy, T.*, Kingsley, J.L*, Turek P.J., Rosen, M.P., Behr, B., Tüzel, E.#, Demirci, U.#, “Guidance and self-sorting of active swimmers via 3-D periodic arrays”. Advanced Science, 2018;5(2):1700531.
  65. Race, C.M., Kwon, L.E., Foreman, M.T., Huang, Q., Inan, H., Kesiraju, S., Le, P., Lim, S. J., Smith, A.M., Zangar, R.C., Demirci, U., Anderson, K.S., Cunningham, B.T., “An automated microfluidic assay for photonic crystal enhanced detection and analysis of an antiviral antibody cancer biomarker in serum" IEEE Sensors Journal, 2018; 18 (4).
  66. Zhang, J., Zhao, X., Liang, L., Li, J., Demirci, U., & Wang, S. (2018). A decade of progress in liver regenerative medicine. Biomaterials, 157, 161-176.
  67. Nagashima, J., El Assal, R., Songsasen, N., & Demirci, U. (2018). Evaluation of an ovary‐on‐a‐chip in large mammalian models: Species specificity and influence of follicle isolation status. Journal of tissue engineering and regenerative medicine. doi:10.1002/term.2623
  68.  

    2017


  69. Kingsley, J. L., Demirci, U., & Tuzel, E. (2017). Enhanced flagellar transport in asymmetric periodic arrays. arXiv preprint arXiv:1711.04830.
  70. Giwa, S., Lewis, JK.#, Alvarez, L., Langer, R., Roth, AE., Church, GM., Markmann, JF., Sachs, DH., Chandraker, A., Wertheim, JA., Rothblatt, M., Boyden, ES., Eidbo, E., Lee, WPA., Pomahac, B., Brandacher, G., Weinstock, DM., Elliott, G., Nelson, D., Acker, JP., Uygun, K., Schmalz, B., Weegman, BP., Tocchio, A., Fahy, GM., Storey, KB., Rubinsky, B., Bischof, J., Elliott, JAW., Woodruff, TK., Morris, GJ., Demirci, U., Brockbank, KGM., Woods, EJ., Ben, RN., Baust, JG., Gao, D., Fuller, B., Rabin, Y., Kravitz, DC., Taylor, MJ., Toner, M. “The promise of organ and tissue preservation to transform medicine”. Nature Biotechnology. 2017; 35(6):530-542.
  71. Liu, F., Vermesh, O., Mani, V., Ge, T. J., Madsen, S. J., Sabour, A., ... & Sierra, R. G. (2017). The Exosome Total Isolation Chip. ACS nano, 11(11), 10712-10723.
  72. Inan, H., Wang, S., Inci, F., Baday, M., Zangar, R., Kesiraju, S., Anderson, K., Cunningham, B., Demirci, U., “Isolation, detection, and quantification of cancer biomarkers in HPV-associated malignancies.” Scientific Reports, 2017; 12;7(1):3322.
  73. Choi, J. K., Assal, R. E., Ng, N., Ginsburg, E., Maas, R. L., Anchan, R. M., & Demirci, U. (2017). Bio-inspired solute enables preservation of human oocytes using minimum volume vitrification. Journal of Tissue Engineering and Regenerative Medicine, 12(1). doi:10.1002/term.2439
  74. Choi, J., El Assal, R., Ng, Ginsburg, E., Maas, R., N., Anchan, R., Demirci, U.,“Bio-inspired osmolyte enables preservation of human oocyte using minimum volume vitrification.” Journal of Tissue Engineering and Regenerative Medicine, 2017 doi: 10.1002/term.2439.
  75. Kingsley, James L., Utkan Demirci, and Erkan Tuzel. "Enhanced flagellar transport in asymmetric periodic arrays." arXiv preprint arXiv:1711.04830 (2017).
  76. Durmus, G., Tocchio, A., Howell, A., Sridhar, K., Acker, J. P., & Demirci, U. (2017, September). A Magnetic Levitation System to Study the Impact of Donor Gender, Age and Blood Storage Conditions on Red Blood Cell Density Profile. TRANSFUSION (Vol. 57, pp. 32A-32A).
  77. Inan, H., Kingsley, J. L., Ozen, M. O., Tekin, H.C., Hoerner, C.R., Imae, Y.I., Metzner, T.J., S. Preiss, J.S., Durmus, N.G., Ozsoz, M., Wakelee, H., Fan, A., Tüzel, E., Demirci, U.# “Monitoring Neutropenia for Cancer Patients at the Point-of-care (POC)”. Small Methods, 2017, doi.org/10.1002/smtd.201700193
  78. Lipskind, S., Lindsey, J. S., Gerami-Naini, B., Eaton, J. L., O’Connell, D., Kiezun, A., Ho, J. W. K., Ng, N., Parasar, P., Ng, M., Nickerson, M., Demirci, U., Maas, R. and Anchan, R.M., “An embryonic and induced pluripotent stem cell model for ovarian granulosa cell development and steroidogenesis”. Reproductive Sciences, 2017:1933719117725814.
  79. Quinn, M., Chinnasamy, T., Miansarigavzan, M., Jalalian, L., Cedars, M., Demirci, U., & Rosen, M. (2017). Microfluidic sorting selects sperm for clinical use with reduced DNA damage compared to density gradient centrifugation in split semen samples. Fertility and Sterility, 108(3), e79.
  80. Liang, L., Kong, M., Zhou, Sherry., Sheng, Y., Wang, P., Yu, T., Gong, R., Inci, F., Li, L., Demirci, U.#, Wang, S.#, “ An integrated double-filtration microfluidic device for isolation, enrichment and quantification of exosomes from urine for detection of bladder cancer.” Scientific Reports, 2017;7:46224.
  81. Yucha, R.W., Hobbs, K.S., Hanhauser, E., Hogan, L.E., Nieves, W., Ozen, M.O., Inci, F., York, V., Gibson, E.A., Thanh, C., Shafiee, H., El Assal, R., Kiselinova, M., Robles, Y.P., Bae, H., Leadabrand, K.S., Wang, S., Deeks, S.G., Kuritzkes, D.R., Demirci, U., Henrich, T.J. "High-throughput Characterization of HIV-1 Reservoir Reactivation Using a Single-Cell-in-Droplet PCR Assay” EBioMedicine, 2017; doi.org/10.1016/j.ebiom.2017.05.006.
  82. Zhu, Y., Serpooshan, V., Wu, S., Demirci. U., Chen, Pu., Guven, S., “Tissue Engineering of 3D Organotypic Microtissues by Acoustic Assembly”. Springer Protocols, 2017, doi: 10.1007/7651_2017_68.
  83. Serpooshan, V., Chen, P., Wu, H., Lee, S., Sharma, A., Hu, D. A., Wu, S. M. (2017). Bioacoustic-enabled patterning of human iPSC-derived cardiomyocytes into 3D cardiac tissue. Biomaterials, 131, 47-57.
  84. Sher, M., Zhuang, R., Demirci, U., & Asghar, W. (2017). Paper-based analytical devices for clinical diagnosis: recent advances in the fabrication techniques and sensing mechanisms. Expert Review of Molecular Diagnostics, 17(4), 351-366.
  85. Inan, H., Poyraz, M., Inci, F., Lifson, M.A., Baday M., Cunningham, B., Demirci, U., “Photonic crystals: emerging biosensors for POC applications.” Chemical Society Reviews; 2017.
  86.  

    2016


  87. El Assal, R., Gurkan, U.A., Chen, P., Juillard, F., Beauchemin, Tocchio, A., Chinnasamy, T., C., Unluisler, S., Canikyan, S., Holman, A., Srivatsa, S., Kaye, K.M., Demirci, U., “3-D Microwell Array System for Culturing Virus Infected Tumor Cells.” Scientific Reports; 2016 ; 6:39144. PMCID: PMC5177905.
  88. Calibasi, G., Guven, S., Foygel, K., Goldman, A., Chen, P., Sengupta, S., Paulmurugan, R., Baskin, Y., Demirci, U., “Dynamic microenvironment induces phenotypic plasticity of esophageal cancer cells.” Scientific Reports 2016; (In press).
  89. Ermis, M., Akkaynak, D., Chen, P., Demirci, U.*, Hasirci, V.*, “A high throughput approach for analysis of cell nuclear deformability at single cell level.” Scientific Reports 2016; (In press).
  90. Mani, V., Paleja, B., Larbi, K., Kumar, P., Tay, J., Siew, J., Inci, F., Wang, S., Chee, C., Wang, Y., Demirci, U., Libero G., Singhal, A.,“ Microchip-based ultrafast serodiagnostic assay for tuberculosis.” Scientific Reports 2016; (In press).
  91. Hasturk, O., Sivas, A., Karasozen, B., Demirci, U., Hasirci, N., Hasirci, V.,“Quantification of Type, Timing and Extent of Cell Body and Nucleus Deformations Caused by the Dimensions and Hydrophilicity of Square Prism Micropillars” Advanced Healthcare Materials 2016; (In press).
  92. Li, Y., Chen, P., Wang, Y., Yan, S., Feng, X., Du, W., Koehler, S., Demirci, U., Liu, B., “Rapid Assembly of heterogeneous 3D cell microenvironments in microgel array.” Advanced Materials, 2016; 0:1–5. DOI: 10.1002/adma.201600247.(PDF)
  93. Lifson, M.A., Ozen, M., Inci F., Wang S., Inan H., Baday M., Henrich T.J., Demirci, U., “Advances in biosensing strategies for HIV detection, diagnosis, and therapeutic monitoring.” Advanced Drug Delivery Reviews, 2016.(PDF)
  94. Asghar, W., Shafiee, H., Velasco, V., Sah, V., Guo, S., El Assal, R., Rajagopalan, A., Jahangir, M., Anchan, R., Mutter, G., Ozan, M., Ozkan, C., Demirci, U., “Toxicology study of single-walled carbon nanotubes and reduced grapheme oxide in human sperm.” Scientific Reports, 2016; 19; 6:30270.(PDF)
  95. Wang, S., Chinnasamy, T., Lifson, M., Inci, F., Demirci, U., “Flexible substrate-based devices for point-of-care diagnostics.” Trend in Biotechnology, 2016. (PDF)
  96. Yildiz, A.*, El Assal, R.*, Chen, P., Guven, S., Inci, F., Demirci, U., “Towards Artificial Tissue Models: Past, Present, and Future of 3-D Bioprinting.” Biofabrication, 2016; 8(1):014103 (PDF)
  97. Asghar, W., Yuksekkaya, M., Shafiee, H., Zhang, M., Ozen, M., Inci, F., Kocakulak, M., Demirci, U., “Engineering long shelf life multi-layer biologically active surfaces on microfluidic devices for point of care applications” Scientific Reports 6; DOI:10.1038/srep21163 (PDF)
  98. Wang, S., Lifson, M., Inci, F., Liang, L., Sheng, Y., Demirci, U., “Advances in addressing technical challenges of point-of-care diagnostics in resource-limited settings.” Expert Review of Molecular Diagnostics, 2016; DOI:10.1586/14737159.2016.1142877 (PDF)
  99.  

    2015


  100. El Assal, R.*, Chen, P.*, Demirci, U., “Highlights from the latest articles in advanced biomanufacturing at micro- and nano-scale.” Nanomedicine, 2015; 10(3):347-50. PMCID: PMC4447141.(PDF)
  101. Yildiz, U.H., Inci, F., Toy, M., Wang, S., Tekin, H.C., Javaid, A., Lau, D., Demirci, U., “Recent advances in micro/nanotechnologies for global control of hepatitis B infection.” Biotechnology Advances 2015;33(1):178-90. PMCID: PMC4433022 (PDF)
  102. Guven, S., Lindsey, J., Poudel, I., Chinthala, S., Nickerson, M., Gerami-Naini B., Gurkan, U.A., Anchan, R.M., Demirci, U., “ Functional maintenance of differentiated embryoid bodies in microfluidic systems:  a platform for personalized medicine.” Stem Cells Translational Medicine 2015; 4(3):261-8. PMCID: PMC4339847 (PDF)
  103. Tasoglu, S., Tekin, H.C., Inci, F., Wang, S., Johanning, F.W., Johanning, G., Colevas, D., Demirci, U., “Advances in nanotechnology and microfluidics for human papillomavirus diagnostics.” Proceedings of the IEEE 2015;103(2):161-178. (PDF)
  104. Shafiee, H.*, Asghar, W.*, Inci, F.*, Yuksekkaya, M., Jahangir, M., Zhang, M., Durmus, NG., Gurkan, UA., Kuritzkes, D., Demirci. U., “Paper and flexible substrates as materials for biosensing platforms to detect multiple biotargets.” Scientific Reports 2015; 6;5:8719. PMCID: PMC4351531 (PDF)
  105. Tasoglu, S., Yu, C., Liaudaskaya, V., Guven, S., Migliaresi, C., Demirci, U., “Magnetic levitational assembly for living material fabrication.” Advanced Healthcare Materials 2015; 4(10):1469-76. PMCID: PMC4504784 (PDF)
  106. Shafiee, H., Kanakasabapathy, M.K., Juillard, F., Keser, M., Sadasivam, M., Yuksekkaya, M., Hanhauser, E., Henrich, T., Kuritzkes, D., Kaye, K., Demirci, U., “Printed flexible plastic microchip for viral load measurement through quantitative detection of viruses in plasma and saliva.” Scientific Reports 2015; 4: 9919. PMCID: PMC4456945 (PDF)
  107. Guven, S., Chen, P., Inci, F., Tasoglu, S., Erkmen, B., Demirci, U., “Multiscale assembly for tissue engineering and regenerative medicine.” Trends in Biotechnology 2015; pii: S0167-7799(15)00026-8. PMCID: PMC4416945 (PDF)
  108. Ananta, J., Tekin, H.C., Inci, F., Massoud, T., Renugopalakrishanan, V., Viswanathan, S., Ajayan, P., Liepmann, D., Demirci, U., Paulmurugan, R., "High sensitive biosensors for MicroRNA quantitation- A clinical perspective.”, in Nanomaterials in Health Care (Edited by Venkatesan Renugopalakrishnan), Materials Research, Society and Cambridge University Press, 2015.
  109. Asili, M., Chen, P., Hood, A., Purser, A., Hulsey, R., Johnson, L., Ganesan, A., Demirci, U., Topsakal, E., “Flexible microwave antenna applicator for chemo-thermotherapy of the breast.” IEEE Antennas and Wireless Propagation Letters 2015;14:1778-81. (PDF)
  110. Tokel, O., Yildiz, U.H., Inci, F., Durmus, N.G., Ekiz, O.O., Turker, B., Cetin, C., Rao, S., Sridhar, K., Natarajan, N., Shafiee, H. Dana, Aykutlu, Demirci, U., “Portable microfluidic integrated plasmonic platform for pathogen detection.” Scientific Reports 2015; 24;5:9152. PMCID: PMC4371189 (PDF)
  111. Viswanathan, S., Narayanan, T., Aran, K., Fink, K., Paredes, J., Ajayan, P., Filipek, S., Miszta, P., Tekin, H.C., Inci, F., Demirci, U., Li, P., Bolotin, K., Liepmann, D., Renugopalakrishanan, V., “Graphene–protein field effect biosensors: glucose sensing.” Materials Today 2015;18:9:513-22. (PDF)
  112. Tasoglu, S., Khoory, J., Tekin, H.C., Thomas, C., Karnoub, A.E., Ghiran, I., Demirci, U., “Levitational image cytometry with temporal resolution.” Advanced Materials 2015;27(26):3901-8. PMCID: PMC4631436 (PDF)
  113. Li, B., Wang, L., Xu, F., Gang, X., Demirci, U., Wei, D., Li, Y., Feng, Y., Jia, D., Zhou, Y. “Hydrosoluble, UV-crosslinkable and injectable chitosan for patterned cell-laden microgel and rapid transdermal curing hydrogel in vivo.” Acta Biomaterialia 2015;22:59-69. (PDF)
  114. Asghar, W.*, El Assal, R.*, Shafiee, H., Pitteri, S., Paulmurugan, R., Demirci, U., “Engineering cancer microenvironments for in vitro 3-D tumor models.” Materials Today 2015;18(10):539-53. (PDF)
  115. Sobieranski, A.C., Inci, F., Tekin, H.C., Yuksekkaya, M., Comunello, E., Cobra, D., Wangenheim, A., Demirci, U., “Portable Lensless Wide-field Microscopy Imaging Platform based on Digital Inline Holography and Multi-Frame Pixel Super-Resolution.” Light: Science & Applications 2015;4:e346. (PDF)
  116. Chen, P. *, Guven, S. *, Usta, O. B., Yarmush, M. L., Demirci, U., “Bio-tunable acoustic node assembly of organoids.” Advanced Healthcare Materials, 2015;4(13):1937-43. (PDF)
  117. Durmus, N.G.*, Tekin, H.C.*, Guven, S., Sridhar, K., Yildiz, A.A., Calibasi, G., Ghiran, I., Davis, R.#, Steinmetz, L.#, Demirci, U.#, “Magnetic levitation of single cells.” Proceedings of the National Academy of Science (USA), 2015;112(28):E3661-8. PMCID: PMC4507238 (PDF)
  118. Inci, F., Fillippini, C., Baday, M., Ozen, M.O., Calamak, S., Durmus, N.G., Wang, S., Hanhauser, E., Hobbs, K., Juillard, F., Kuang, P., Vetter, M.L., Carocci, M., Tamamoto, H., Takagi, Y., Yildiz, U.H., Akin, D., Wesemann, D., Singhal, A., Yang, P., Nibert, M., Fichorova, R., Lau, D., Henrich, T., Kaye, K., Schachter, S., Kuritzkes, D., Steinmetz, L., Gambhir, S.S., Davis, R.#, Demirci, U.#, “A Multi-target, quantitative nanoplasmonic electrical-field enhanced resonating device for diagnostics.” Proceedings of the National Academy of Science (USA), 2015; 112(32):E4354-63. PMCID: PMC4538635 (PDF)
  119. Luo, Z., Guven, S., Gozen, I., Chen, P., Tasoglu, S., Anchan, R., BoFeng, B., Demirci, U., “Deformation of a single mouse oocyte in a constricted microfluidic channel.” Microfluidics and Nanofluidics, 2015; 19:883–890. (PDF)
  120. Baday, M., Calamak, S., Durmus, N.G., Davis, R., Steinmetz, L., Demirci, U., “Integrating cell phone imaging with magnetic levitation (i-LEV) for label-free blood analysis at the point-of-living.” Small, 2015; DOI: 10.1002/smll.201501845. (PDF)
  121. Bouyer, C., Chen, P., Guven, S., Demirtas, T.T., Nieland, T., R., Padilla, F., Demirci, U., “A novel bio-acoustic levitational (BAL) assembly method for engineering of multilayered, three-dimensional brain-like constructs, using human embryonic stem cells derived neuro-progenitors.” Advanced Materials, 2015;1:161-7 (PDF)
  122. Yildiz, A., El Assal, R., Chen, P., Guven, S., Inci, F., Demirci, U., “Towards Artificial Tissue Models: Past, Present, and Future of 3-D Bioprinting.” Biofabrication, 2015 (In press)
  123. Namkoong, B., Guven, S., Ramesan, S., Liaudanskaya, V., Abzhanov, A., Demirci, U., “Recapitulating cranial osteogenesis with neural crest cells in 3-D microenvironments.” Acta Biomaterialia, 2015; 31:301-311. (PDF)
  124.  

    2014


  125. Akkaynak, D., Treibitz, T., Xiao, B., Gurkan, U. A., Allen, J., Demirci, U., and Hanlon, R., Use of commercial off-the-shelf (COTS) digital cameras for scientific data acquisition and scene-specific colour calibration.”  Journal of the Optical Society of America A. 2014; 31(1): 1-11. PMCID: PMC4028365 (PDF)
  126. Wang, S., Tasoglu, S., Chen, P. Z., Chen, M. , Akbas, R., Wach, S., Ozdemir, C. I., Gurkan, U. A., Giguel, F. F., Kuritzkes, D., Demirci, U., “Micro-a-fluidics ELISA for rapid CD4 cell count at the point-of-care.” Scientific Reports 2014; 4: 3796. PMICD: PMC3898414 (PDF)
  127. Tasoglu, S.*, Diller, E.*, Guven, S., Sitti, M.#, Demirci, U.#, “ Untethered micro-robotic coding of three-dimensional material composition.” Nature Communications 2014; 5: 3124. PMCID: PMC3947548 (PDF)
  128. Kilinc, S.#, Gurkan, U. A., Koyuncu, G., Dogan, M., Tugmen, C., Kebapci, E., Karaca, C., Tan, S., Pala, E. E., Bayol, U., Baran, M., Kurtulmus, Y., Pirim, I., Guven, S., Demirci, U.#, “Chimerism after BMSC transfusion in intestinal transplant patients with short bowel syndrome.” Transplantation Proceedings 2014; 45 (6) 2125. (PDF)
  129. Shafiee, H., Lidstone, E.A., Jahangir, M., Inci, F., Hanhauser, E., Henrich, T.J., Kuritzkes, D.R., Cunningham, B.T.#, Demirci, U.#, “Nanostructured optical photonic crystal biosensor for HIV viral load measurement.” Scientific Reports 2014; 4: 4116. PMCID: PMC3937800 (PDF)
  130. Gurkan, U.A., El Assal, R, Yildiz, S.E., Sung, Y., Trachtenberg, A.J., Kuo, W.P., Demirci, U.,  “Engineering anisotropic biomimetic fibrocartilage microenvironment by bioprinting mesenchymal stem cells in nanoliter gel droplets.” ACS Molecular Pharmaceutics 2014; 11(7):2151-9. PMCID: PMC4096228 (PDF)
  131. Tokel, O., Inci, F., Demirci, U., “Advances in plasmonic technologies for point of care    applications.” Chemical Reviews 2014; 114(11):5728-52. PMCID: PMC4086846 (PDF)
  132. Asghar, W., Velasco, V., Kingsley J.L., Shoukat, M.S., Shafiee, H., Anchan, R.M., Mutter, G.L.,  Tüzel, E., Demirci, U., “Selection of functional human sperm with higher DNA integrity and fewer reactive oxygen species.” Advanced Healthcare Materials 2014; 9 (20) 3374-84. PMCID: PMC4194169 (PDF)
  133. Chen, P., Luo, Z., Guven, S., Tasoglu, S., Ganesan, A. V., Weng, A., Demirci, U., “Microscale assembly directed by liquid-based template.” Advanced Materials 2014; 10; 26(34):5936-41. PMCID: PMC4159433 (PDF)
  134. Manu, V., Wang, S., Inci, F., Singhal, A. #, Demirci, U. #, “Emerging technologies for monitoring drug-resistant tuberculosis at the point-of-care.” Advanced Drug Delivery Reviews 2014; 30;78:105-17. PMCID: PMC4254374 (PDF)
  135. El Assal, R., Guven, S., Gurkan, U. A., Gozen, I., Shafiee, H., Dalbeyber, S., Abdalla, N., Gawain, T., Fuld, W., Illigens, B. M. W., Estanislau, J., Khoory, J., Kaufman, R., Zylberberg, C., Lindeman, N., Wen, Q., Ghiran, I., Demirci, U., “Bio-inspired cryo-ink preserves red blood cell phenotype and function during nanoliter vitrification.” Advanced Materials 2014; 26(33):5815-22. PMCID: PMC4161503 (PDF)
  136. Asghar, W.*, El Assal, R.*, Shafiee, H., Anchan, R., Demirci, U., “Preserving human cells for regenerative, reproductive, and transfusion medicine.” Biotechnology Journal; 2014; 9 (7) 895-903. PMCID: PMC4145864 (PDF)
  137. Shafiee, H., Wang, S., Inci, F., Toy, M., Henrich, T.J., Goroff, M., Reich, M.R., Kuritzkes, D.R., Demirci, U., “Emerging technologies for point-of-care management of HIV infection.” Annual Review of Medicine 2014; 66:387-405. (PDF)
  138. Tasoglu, S., Yu, C.H., Gungordu, H.I., Guven, S., Vural, T., Demirci, U., “Guided and magnetic self-assembly of tunable magnetoceptive gels.” Nature Communications 2014; 5: 4702. PMCID: PMC4153407 (PDF)
  139. Luo, Z.Y., He, L., Wang, S., Tasoglu, S., Xu, F., Demirci, U., Bai, B.,  “Two-dimensional numerical study of flow dynamics of a nucleated cell tethered under shear flow.” Chemical Engineering Science 2014; 119: 236-224. (PDF)
  140. Lissandrello, C.*, Inci, F.*, Francom, M., Paul, M.R., Demirci, U., Ekinci, K.L., “Nanomechanical motion of Escherichia coli adhered to a surface.” Applied Physics Letters 2014; 105, 113701. (PDF)
  141.  

    2013


  142. Wang, S., Inci, F., Libero, G., Singhal, A., Demirci, U., “Point-of-care assays for tuberculosis: role of nanotechnology/microfluidics.” Biotechnology Advances 2013, 31(4): 438-449. PMCID: PMC3602163 (PDF)
  143. Tasoglu, S., and Demirci, U., “Bioprinting for stem cell research.” Trends in Biotechnology 2013; 31(1): 10-19. PMCID: PMC3534918 (PDF)
  144. Shafiee, H., Jahangir. M., Inci F., Wang. S., Willenbrecht, R., Giguel, F., Tsibris, A., Kuritzkes, D., Demirci, U., “Acute On-Chip HIV Detection through label-free electrical sensing of viral nano-lysate on-chip.” Small 2013, 9 (115): 2553-2563. PMCID: PMC3761882 (PDF)
  145. Tasoglu, S., Safaee, H., Zhang, X., Kingsley, J. L., Catalano, P. N., Gurkan, U.A., Nureddin, A., Kayaalp, E., Anchan, R. M., Maas, R. L., Wang, S., Tuzel, E.#, Demirci, U.#, “Exhaustion of racing sperm in nature-mimicking microfluidic channels during sorting.” Small 2013; 9(20): 3374-84. PMCID: PMC3821799 (PDF)
  146. Gurkan, U.A., Fan, Y., Xu, F., Erkmen, B., Urkac, E. S., Parlakgul, G., Bernstein, J., Xing, W., Boyden, E. S., and Demirci U., “Simple precision creation of digitally specified, spatially heterogeneous, engineered tissue architectures.” Advanced Materials 2013; 25(8): 1192-1198. PMCID: PMC3842103 (PDF)
  147. Tasoglu, S., Kavaz, D., Gurkan, U. A., Guven, S., Chen, P., Zheng, R., and Demirci U., “Paramagnetic levitational assembly of hydrogels.” Advanced Materials 2013; 25(8): 1137-1143. PMCID: PMC3823061 (PDF)
  148. Tasoglu, S., Gurkan, U. A., Wang, S., Demirci, U., “Manipulating biological agents and cells in microscale volumes for applications in medicine.” Chemical Society Reviews 2013; 42: 5788-5808. PMCID:PMC3865707 (PDF)
  149. Inci, F., Tokel, O., Wang, S., Gurkan, U. A., Tasoglu, S., Kuritzkes, D., and Demirci, U., “ Nanoplasmonic quantitative detection of intact viruses from unprocessed whole blood.” ACS Nano 2013; 7 (6): 4733-4745. PMCID: PMC3700402 (PDF)
  150. Durmus, G. N., Tasoglu, S., and Demirci, U., “Bioprinting: Functional droplet networks.” Nature Materials 2013; 12 (6): 478-479. PMCID:PMC3534918 (PDF)
  151. Rizvi, I., Gurkan, U. A., Tasoglu, S., Alagic, N., Celli, J. P., Mensah, L. B., Mai, Z., Demirci, U. #, and Hasan, T. #, “Flow Induces a epithelial-mesenchymal transition, cellular heterogeneity and biomarker modulation in 3D ovarian cancer nodules.” Proceedings of the National Academy of Science 2013; 110 (22): E1974-E1983. PMCID: PMC 3670329 (PDF)
  152. Wang, L., Asghar, W., Demirci, U.#, Wan, Y#., “Nanostructured substrate for isolation of circulating tumor cells.” Nano Today 2013; 8 (4): 374-387. PMCID: PMC4059613 (PDF)
  153.  

    2012


  154. Zhang, X., Khimji, P. I., Shao, L., Safaee, H., Desai, K., Keles, H. O., Gurkan, U. A., Kayaalp, E., Nureddin, A., Anchan, R., Maas, R., Demirci, U., “Nanoliter droplet vitrification for oocyte cryopreservation.” Nanomedicine 2012; 7(4): 553-564. PMCID: PMC3319864 (PDF)
  155. Guldiken, R., Jo, M.C., Gallant, N. D., Demirci, U., Zhe, J. “Sheathless size-based acoustic particle separation.” Sensors 2012; 12(1): 905-922. PMCID: PMC3279246 (PDF)
  156. Wang, S., Esfahani, M., Gurkan, U. A., Inci F., Kuritzkes, D. R, Demirci, U., “Efficient on-chip isolation of HIV subtypes.” Lab Chip 2012; 12(8): 1508-15. PMCID: PMC3777392 (PDF)
  157. Wang, S., Inci, F., Chaunzwa, T. L., Ramanujam, A., Vasudevan, A., Subramanian, S., Ip, A. C. F., Sridharan, B., Gurkan, U.A., and Demirci, U., “Portable microfluidic chip for detection of Escherichia coli in produce and blood.” International Journal of Nanomedicine 2012; 7: 1-10. PMCID: PMC3368510 (PDF)
  158. Gurkan, U. A., S., Tasoglu, D., Kavaz, M. C., Demirel, and Demirci U., “Emerging technologies for assembly of microscale hydrogels.” Advanced Healthcare Materials 2012; 1(2): 149-158. PMCID: PMC3774531 (PDF)
  159. Ceyhan, E., Xu, F., Gurkan, U. A., Emre, A. E., Turali, E. S., El Assal, R., Acikgenc, A., Wu, C. M., and Demirci U., “Prediction and control of number of cells in microdroplets by stochastic modeling.” Lab Chip 2012; 12: 4884-4893. PMCID: PMC3524309 (PDF)
  160. Xu, F., Inci, F., Mullick, O., Gurkan, U. A., Sung, Y., Kavaz, D., Li, B., Denkbas, E. B., and Demirci U., “Release of magnetic nanoparticles from cell-encapsulating biodegradable Nanobiomaterials.” ACS Nano 2012; 6(8): 6640-6649. PMCID: PMC3813440 (PDF)
  161. Gurkan, U. A., Tasoglu, S., Akkaynak, D., Avci, O., Unluisler, S., Canikyan, S., MacCallum, N., and Demirci U., “Smart interface materials integrated with microfluidics for on-demand local capture and release of cells.” Advanced Healthcare Materials 2012; 1: 661-668. PMCID: PMC3774603 (PDF)
  162. Wang, S., Sarenac, D., Chen, M. H., Huang, S., Giguel, F. F., Kuritzkes, D. R. and Demirci U., “Rapid and simple filter microchip to separate plasma and viruses from whole blood.” International Journal of Nanomedicine 2012; 7: 1-10. PMCID: PMC3457680 (PDF)
  163.  

    2011


  164. Moon*, S., Kim*, Y., Dong, L., Lombardi, M., Haeggstrom E., Jensen, R. V., Hsiao, L., Demirci, U., “Drop-on-demand single cell isolation and total RNA analysis.” PLoS ONE 2011; 6(3): e17455. PMCID: PMC3055874 (PDF)
  165. Samot, J., Sangjun, M., Shao, L., Xiaohui, X., Xu, F., Song, Y. S., Keles, H. O., Matloff, L., Markel, J., and Demirci, U. "Blood banking in living droplets." PLoS ONE 2011; 6(3): e17530. PMCID: PMC3055869 (PDF)
  166. Zhang, X., Catalono, P. N., Gurkan, U. A., Khimji, P. I., Demirci, U., “Emerging technologies in medical applications of minimum volume vitrification.” Nanomedicine 2011; 6(6): 1115-1129. PMCID: PMC3193162 (PDF)
  167. Xu, F., Sridharan, B., Wang, S., Durmus, N. G., Yavuz, A. S., Gurkan, U. A., Demirci, U., “Living bacterial sacrificial porogens for porous hydrogel scaffolds.” PLoS ONE 2011; 6(4): e19344. PMCID: PMC3084297 (PDF)
  168. Xu, F., Beyazoglu, T., Hefner, E., Gurkan, U. A., Demirci, U., “Automated and adaptable quantification of cellular alignment from microscopic images for tissue engineering application.” Tissue Engineering Part C, 2011; 17(6):641-649. PMCID: PMC3103056 (PDF)
  169. Gurkan, U. A., Moon, S. J., Geckil, H., Xu, F., Lu, T. J., Demirci, U., “Miniaturized Lensless imaging systems for cell and microorganism visualization in point-of-care testing.” Biotechnology Journal 2011; 6(2): 138-149. PMCID: PMC3066565 (PDF)
  170. Xu*, F., Celli*, J., Rizvi, I., Moon, S., Tayyaba, H., Demirci, U., “A three-dimensional in vitro ovarian cancer coculture model using a high-throughput cell patterning platform.” Biotechnology Journal 2011; 6(2): 204-212. PMCID: PMC3780785 (PDF)
  171. Xu, F., Sridharan, B., Wang, S., Gurkan, U. A., Syverud, B., Demirci, U., “Embryonic Stem Cell Bioprinting for uniform and controlled size embryoid body formation.” Biomicrofluidics 2011, 5(2): 22207. PMCID: PMC3145232 (PDF)
  172. Xu, F., Wu, J., Wang, S., Durmus, N. G., Gurkan, U. A., Demirci, U., “Microengineering Methods for cell-based microarrays and their high-throughput drug-screening applications.” Biofabrication 2011; 3(3): 034101. PMCID: PMC3176964 (PDF)
  173. Zhang, X., Khimji, P. I., Keles, H. O., Gurkan, U. A., Kayaalp, E., Nureddin, A., Demirci, U., “Lensless imaging for simultaneous microfluidic sperm monitoring and sorting.” Lab on a Chip 2011; 11: 2535. PMCID: PMC3812937 (PDF)
  174. Moon, S., Gurkan, U. A., Blander, J., Fawzi, W. F., Aboud, S., Mugusi, F., Kuritzkes, D. R., and Demirci, U., “Enumeration of CD4+ T-cells using a portable microchip count platform in Tanzanian HIV-infected patients.” PLoS ONE 2011; 6(7): e21409. PMCID: PMC3130745 (PDF)
  175. Moon, S., Gurkan, U. A., Ceyhan, E., Demirci, U., “Statistical modeling of single target cell encapsulation.” PLoS ONE 2011; 6(7): e21580. PMCID: PMC3140975 (PDF)
  176. Xu, F., Wu, C. M., Rengarajan, V., Finley, T. D., Keles, H. O., Sung, Y., Li, B., Gurkan, U. A., and Demirci, U., “Three-dimensional magnetic assembly of microscale hydrogels.” Advanced Materials 2011; 23(37): 4254-4260. PMCID: PMC3534971 (PDF)
  177. Xu, F., Finley, T. D., Turkaydin, M., Sung, Y., Gurkan, U. A., Guldiken, R., and Demirci, U., “The assembly of cell-encapsulating microscale hydrogels using acoustic waves.” Biomaterials 2011; 32(31): 7847-55. PMCID: PMC3244142 (PDF)
  178. Sekeroglu, K., Gurkan, U. A., Demirci, U., Demirel, M. C., “Transport of a soft cargo on a nanoscale ratchet.” Applied Physics Letters 2011; 99(6): 063703. PMCID: PMC3166334 (PDF)
  179. Gurkan U. A., Anand, T., Tas, T., Elkan D., Akay, A., Keles, H. O., Demirci, U., “Controlled viable release of selectively captured label-free cells in microchannels.” Lab Chip 2011; 11(23): 3979-89. PMCID: PMC3814023 (PDF)
  180. Wang, S. Q., Zhao, X., Khimji, I., Edwards, D., Qiu, W., Akbas, R., Cramer, D. W., Ye, B., Demirci, U., “Integration of cell phone imaging with microchip ELISA to detect ovarian cancer HE4 Biomarker in urine at the point-of-care.” Lab Chip 2011; 11: 3411-3418. PMCID: PMC3767574 (PDF)
  181.  

    2010


  182. Song, Y. S., Adler, D., Xu, F., Kayaalp, E., Nureddin, A., Anchan, R. M., Maas, R. L., Demirci, U., "Vitrification and levitation of a liquid droplet on liquid nitrogen." Proceedings of the National Academy of Science 2010; 107(10): 4956-600. PMCID: PMC2826340 (PDF)
  183. Moon, S.*, Hasan, S. K.*, Song, Y. S., Xu, F., Keles, H. O., Manzur, F., Mikkilineni, S., Hong, J. W., Nagatomi, J., Haeggstrom, E., Khademhosseini, A., Demirci, U., “Layer by layer 3D tissue epitaxy by cell laden hydrogel droplets.” Tissue Engineering C 2010; 16, 1:157-166. PMCID: PMC2818246 (PDF)*
  184. Lee, W. G., Kim, Y., Demirci, U., Khademhosseini, A., “Nano and microfluidics for diagnosis of infectious diseases in developing countries.” Advanced Drug Delivery Reviews 2010; 62(4-5):449-57.PMCID: PMC2829381 (PDF)
  185. Xu, F., Moon, S., Zhang, X., Shao, L., Song, Y. S., Demirci, U., “Multiscale heat and mass transfer modeling of cell and tissue cryopreservation.” Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences 2010; 368, 561-583. PMCID: PMC3263795 (PDF)
  186. Wang, S. Q.*, Xu, F.*, Demirci, U., “Advances in developing HIV-1 viral load assays for resource-limited setting.” Biotechnology Advances 2010; 28(6):770-81. PMCID: PMC2946488 (PDF)
  187. Geckil, H. *, Xu, F. *, Zhang, X., Moon, S., Demirci, U., “Engineering hydrogels as extracellular matrix mimics.” Nanomedicine 2010; 5(3), 469-484. PMCID: PMC 2892416 (PDF)
  188. Xu, F.*, Moon, S.*, Emre, A. E., Turali, E. S., Song, Y. S., Hacking, A.,  Nagatomi, J., Demirci, U., “A Droplet based building block approach for bladder smooth muscle cell (SMC) proliferation.” Biofabrication 2010; 014105. (PDF)
  189. Park, J. H., Chung, B. G., Lee, W. G., Kim, J., Brigham, M., Shim, J., Lee, S., Hwang, C., Durmus, G., Demirci, U. Khademhosseini, A., “Microporous cell-laden hydrogels for engineered tissue constructs.” Biotechnology and Bioengineering 2010; 106(1), 138-148. PMCID: PMC2847036 (PDF)
  190. Tasoglu, S., Kaynak, G., Szeri, A. J., Demirci, U., Muradoglu, M., “Impact of a compound droplet on a flat surface: A model for single cell epitaxy.” Physics of Fluidics 2010; 18; 22(082103). PMCID: PMC2937050 (PDF)
  191.  

    2009


  192. Moon, S., Keles, H. O., Ozcan A., Haeggstrom E., Kuritzkes D., Khademhosseini A., Demirci, U., “Integrating microfluidics and lensless imaging for point-of-care testing.” Biosensors and Bioelectronics 2009; 24, 3208-14. PMCID: PMC2733855 (PDF)
  193. Kim, Y.*, Moon, S.*, Kuritzkes, D.R., Demirci, U., “Quantum dot-based nanoscale detection and imaging of HIV using microfluidic device.” Biosensors and Bioelectronics 2009; 25, 1, 253-258. (PDF)
  194. Lee, W. G., Demirci, U., Khademhosseini, A., “Microscale electroporation: challenges and perspectives for clinical applications.” Integrative Biology 2009; 1:242-251. PMCID: PMC3771519 (PDF)
  195. Song Y. S., Moon, S., Hulli, L., Hasan, S. K., Demirci, U., “Microfluidics for cryopreservation.” Lab Chip 2009; 9, 13, 1874-1881. PMCID: PMC2719835 (PDF)
  196. Song, Y.S.*, Lin, R. L. *, Montesano, G., Durmus, G., Lee, G., Yoo, S., Kayaalp, E., Hæggström, E., Khademhosseini, A., Demirci, U., “Engineered 3D tissue models for cell-laden microfluidic channels.” Analytical and Bioanalytical Chemistry 2009; 395, 1, 185-193. (PDF)
  197. Alyassin, M.*, Moon, S.*, Keles, H.O., Manzur, F., Lin R. L., Hasan, S. K., Hæggstrom E., Kuritzkes, D. R., Demirci, U., “Rapid automated cell quantification on HIV microfluidic devices.” Lab Chip 2009; 9: 3364-3369. PMCID: PMC3839566 (PDF)
  198.  

    2008


  199. Ozcan, A., Demirci, U., “Ultra wide-field lens-free monitoring of cells on-chip.” Lab Chip 2008; 8(1), 98-106. (PDF)
  200. Manbachi, A., Shrivastava, S., Cioffi, M., Chung, B. G., Moretti, M., Demirci, U., Yliperttula, M., Khademhosseini, A., “Microcirculation within grooved substrates regulates cell positioning and cell docking inside microfluidic channels.” Lab Chip 2008; 8, 747-754. PMCID: PMC2668874 (PDF)
  201. Tasoglu, S., Demirci, U., Muradoglu, M., “The effect of soluble surfactant on the transient motion of a buoyancy-drive bubble.” Physics of Fluids 2008; 20, 040805. (PDF)
  202.  

    2007


  203. Cheng, X., Irimia, D., Dixon, M., Sekine, K., Demirci, U., Zamir, L., Tompkins, R. G., Rodriguez, W. R., Toner, M., “A microfluidic device for practical label-free CD4+ T cell counting of HIV-infected subjects.” Lab Chip 2007; 2:170-178. PMCID: PMC4028372 (PDF)
  204. Ling, Y., Rubin, J., Deng, Y., Huang, C., Demirci, U., Karp J., Khademhosseini A., “A cell-laden microfluidic hydrogel.” Lab Chip 2007; 6, 756. (PDF)
  205. Cheng, X., Liu, Y., Irimia, D., Demirci, U., Yang L., Zamir, L., Rodriguez, W., Toner, M., Bashir, R., “Cell detection and counting through cell lysate impedance spectroscopy in microfluidic devices.” Lab Chip 2007; 6, 746. (PDF)
  206. Cheng, X., Irimia, D., Dixon, M., Ziperstein, J. C., Demirci, U., Zamir U., Tompkins R. G., Toner M., Rodriguez W., “A Microchip approach for practical label-free CD4+ T cell counting of HIV-infected subjects in resource-poor settings journal of acquired immune deficiency syndromes.” Journal of AIDS 2007; 45(3):257-261. (PDF)
  207. Demirci, U., Montesano, G., “Cell encapsulating droplet vitrification.” Lab Chip 2007; 7, 1428 - 1433. (PDF)
  208. Demirci, U., Montesano, G., “Single cell by acoustic picoliter droplets.” Lab Chip 2007; 7, 1139 - 1145. (PDF)
  209. Ozcan, A., Demirci, U., “Rewritable self-assembled long-period gratings in photonic bandgap fibers using microparticles.” Optics Communications 2007; 270(2): 225-228. (PDF)
  210. Demirci, U., “Using micro-electro-mechanical systems (MEMS) to develop diagnostic tools.” J Vis Exp 2007; (8), 314. PMCID: PMC2562494 (PDF)
  211. Moon, S., Lin, R., Demirci, U., “CD4+ T-lymphocyte capture using a disposable microfluidic chip for HIV.” J Vis Exp 2007; (8), 315. PMCID: PMC2561241 (PDF)
  212. Moon, S., Lin, P., Keles, Yoo, S., Demirci, U., “Title cell encapsulation by droplet.” J Vis Exp 2007; (8), 316. PMCID: PMC2562495 (PDF)
  213.  

    2006


  214. Demirci, U., Toner, M., “Direct etch method for microfludic channel and nano-height post fabrication by picoliter droplets.” Applied Physics Letters 2006; 88(5):053117. (PDF)
  215. Demirci, U., “Droplet-based photoresist deposition.” Applied Physics Letters 2006; 88(14): 144104. (PDF)
  216. Demirci, U., “Acoustic picoliter droplets for emerging applications in semiconductor industry and biotechnology.” IEEE Journal of Microelectromechanical Systems 2006; 15(4):957-966. (PDF)
  217.  

    2005


  218. Johnson, J., Oralkan, O., Ergun, S., Demirci, U., Karaman, M., Khuri-Yakub, B. T., “Coherent array imaging using phased subarrays - Part II: Simulations and experimental results.” IEEE Trans. on Ultrasonics Ferroelectric Frequency Control 2005; 52(1):51-64. (PDF)
  219. Demirci, U., “Picoliter droplets for spinless photoresist deposition.” Review of Scientific Instruments 2005; 76(6):065103. (PDF)
  220. Demirci, U., Ozcan, A., “Picoliter acoustic droplet ejection by femtosecond laser micromachined multiple-orifice membrane-based 2D ejector arrays.” IEEE Electronics Letters 2005; 41(22): 1219-1220. (PDF)
  221. Demirci, U., Yaralioglu, G., Hæggström, E., Khuri-Yakub, B. T., “Femtoliter to picoliter droplet generation for organic polymer deposition using single reservoir ejector arrays.” IEEE Transactions on Semiconductor Manufacturing 2005; 18(4): 709-715. (PDF)
  222.  

    Before 2005


  223. Oralkan, O., Ergun, A. S., Johnson, J., Karaman, M., Demirci, U., Kaviani, K., Lee, T. H., Khuri-Yakub, B.T., “Capacitive micromachined ultrasonic transducers: next-generation arrays for acoustic imaging?” IEEE Transactions on Ultrasonics Ferroelectrics and Frequency Control 2002; 49(11): 1596-1610. (PDF)
  224. Johnson, J., Oralkan, O., Demirci, U., Ergun, S., Karaman, M., Khuri-Yakub, B. T., “Medical imaging using capacitive micromachined ultrasonic transducer arrays.” Ultrasonics 2002;40(1-8): 471-476. (PDF)
  225. Demirci, U., Ergun, A. S., Oralkan, O., Karaman, M., Khuri-Yakub, B. T., “Forward-viewing CMUT arrays for medical imaging.” IEEE Transactions on Ultrasonics Ferroelectric Frequency Control 2004; 51(7): 887-895. (PDF)
  226. Demirci, U., Yaralioglu, G., Hæggström, E., Khuri-Yakub, B. T., “Acoustically actuated flextensional SixNy and single crystal silicon 2D micromachined ejector arrays.” IEEE Trans. on Semiconductor Manufacturing 2004; 17(4):517-524.(PDF)